Update:
So i talked to chris, and its due to the accessibility of the patch folder, even though the main.ini is accessible.
I get this error i need help with:
AH01276: Cannot serve directory /var/www/vhosts/grayles.net/ragnarok.grayles.net/patch/: No matching DirectoryIndex (index.html,index.cgi,index.pl,index.php,index.xhtml,index.htm,index.shtml) found, and server-generated directory index forbidden by Options directive
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Update:
I have managed to allow access to the folder listing (So no more forbidden errors)
Still having trouble.